Dr. Dan Kiboi is a lecturer at the Department of Biochemistry at Jomo Kenyatta University of Agriculture and Technology (JKUAT).
He completed his Ph.D. in Molecular Medicine at JKUAT. His research interest is analyzing the biochemistry of malaria parasites to expose biological molecules and pathways that could be exploited for interventions. He established a unique niche of selecting, phenotyping, and genotyping drug-resistant Plasmodium berghei parasites over his postgraduate years. He selected pools of drug-resistant parasites against the main long-acting drugs in the artemisinin-based combination therapies in clinical use and those under development. These drugs are lumefantrine, piperaquine, amodiaquine, and pyronaridine. Together with other scientists, he mapped promising mutations in proteins that are highly plausible mediators of drug transport and action. His PostDoc expanded his research focus to validating Plasmodium proteins associated with drug resistance and genes of interest to malaria immunity using both PlasmoGEM resources and the CRISPR/Cas9 system.
Q: Are we going to leave the need to use Artemisinin drugs? If it is not now, do you think in three years there is going to be high resistance with the last resort antimalarial drug?
A: No, Artemisinin (ART) drugs are still effective in many countries. However, from the inception of ART use decades ago, it was apparent that when used alone (monotherapy), ART would rapidly clear parasites from the bloodstream to undetectable levels, but parasites would reappear several days later. If we categorized this type of treatment failure from the beginning, it would have been R1 resistance (clearance of asexual parasites in the bloodstream as in the sensitive parasites, followed by recrudescence). This is why ARTs were partnered with other drugs to enhance their efficacy in artemisinin-based combination therapies (ACTs). Among the main recommended ACTs for treating malaria infections in many African countries are Artemether-lumefantrine (AL), dihydroartemisinin-piperaquine (DHA/PQ), and artesunate-amodiaquine (ASN-AQ). It also means that malaria parasites have an inherent R1 resistance against ART and other drugs, the capacity to sustain life in a state of dormancy for days. This state compromises the partner drugs in the different ACTs.
There are many efforts by the scientific community to generate different combination therapies that still include artemisinin drugs. These combination therapy efforts are intended to protect artemisinin and partner drugs from progressing from reduced efficacy to full-blown resistance. The new medicines called triple artemisinin-based combination therapy (TACT) are at various clinical trial stages.
To effectively complement ART efficacy, it is essential to know which partner drugs can kill dormant parasites. My current study is to investigate parasite dormancy and the effect of different partner drugs on dormant parasites.
Q:Which malaria parasite species are presenting high resistance?
A: More than 90% of malaria infections are caused by Plasmodium falciparum. Other species such as Plasmodium malariae, and Plasmodium ovale exist and cause less than 10% of the infections cumulatively. Of course, you would expect relatively high resistance in Plasmodium falciparum.
Q: What is the level of resistance in terms of percentage?
A: The resistance level varies for different drugs. To answer this question, we must review a brief history of the primary drugs that have been used for the treatment of malaria. These drugs are chloroquine and sulphadoxine-pyrimethamine. The percentage of chloroquine-resistant parasites in Kenya has diminished to, on average, below 10% in the Western, Lake Victoria region, and the Coastal region of Kenya. Sulphadoxine-pyrimethamine (SP) is still used to prevent and treat malaria in pregnant women, and resistance level has continued to rise, but the actual percentage requires further studies.
Q: What is the major contributing factor to drug resistance in malaria?
A: Many factors, both from human and parasites’ perspectives, contribute to resistance. The leading human factors are overuse of antimalarial drugs for unconfirmed malaria cases and poor adherence to a complete treatment regimen for confirmed malaria infections. The main parasite factor is the high flexibility of the parasite to adapt to drugs. I am currently investigating the parasite factor, precisely a less explored conundrum in which parasites enter a temporary growth arrest (dormancy) and reemerge to cause infection when stressors are removed. This is one of the revolutionary research areas that can show new ways of killing parasites when they are potentially highly vulnerable.
Q: Which classes of drugs have presented resistance mechanisms?
A: Parasites have developed resistance to most classes of antimalarial drugs; these are quinoline-based drugs such as chloroquine, amodiaquine, and piperaquine. The other antimalarial drugs are antifolate drugs such as sulphadoxine and pyrimethamine. The resistance mechanisms against these two classes of antimalarial drugs are mainly changes in the DNA of the parasites. These genetic changes in the parasite’s DNA enable the parasite to reduce the drug’s ability to bind to targets or increase the parasite’s ability to expel the toxic drugs away from the target site.
Q:Have drug-resistant malaria parasites been detected in Kenya, which parts of the country is it prevalent the most?
A: In Kenya, drug-resistant parasites are present in two main regions: the Western Lake Victoria region and the Coastal region. These regions have constant malaria transmission. The resistance is mainly against drugs previously used, such as chloroquine, or medications used for pregnant women, such as sulphadoxine-pyrimethamine. However, there are no reports of resistant parasites against the ACTs – Artemether-lumefantrine (AL) or dihydroartemisinin-piperaquine (DHA/PQ), the recommended ACTs for treating malaria infections in Kenya.
It is important to emphasize two key points; first, malaria parasites enter a state of dormancy when exposed to ART and reemerge after withdrawal of the drug. This may be confused for emerging resistant parasites or reduced susceptibility in many instances. Second, parasites that are partially resistant to artemisinin (ART), a key component in the ACTs, have been reported in the neighboring countries, Uganda and Rwanda. The spread of such parasites into Kenya and neighboring countries is a big concern. Studies on how parasites switch to and from the dormant state to initiate new infection and continuous surveillance for ART-resistant parasites are critical in eliminating malaria.
Q: What are some of the pathways that could help address the emergence of antimalarial drugs resistance?
A: The malaria parasite has different stages in the human host that need to be targeted: the liver stage parasites and two blood stages- the asexual blood-stage and the sexual blood stage. Many drugs target the asexual blood-stage parasites that primarily cause the disease symptoms during infection. The most classical pathway targeted by many of the most successful drugs in the market is the hemoglobin digestion pathway in the food vacuole of parasites. Although parasites have developed resistance to some drugs targeting this pathway, a deep understanding of how parasites escape killing may help us utilize such knowledge to kill parasites by outwitting their resistance mechanisms. To address drug resistance, we need to focus on critical pathways and targets for all the three-stage of the parasites. Some of these pathways are fatty acid synthesis, proteasome pathway, nucleic acid synthesis, and phosphorylation.
Q: According to your profile, you have mapped promising mutations in proteins that are highly plausible mediators of drug transport and action. Could you please explain this in simple terms? Or could these proteins be a possible alternative solution to tackling the emerging drug resistance through vaccination or reducing the severity of malaria? Can they be used now or at what time will they be used? Are you still working on it?
A: Our previous studies used parasites resistant to a drug called lumefantrine, a vital partner drug in the ACT–AL. By comparing the DNA of the sensitive parasites to that of the lumefantrine-resistant parasites, we saw changes in the parasite proteins involved in transferring material across different parasite compartments or proteins that can cleave compounds/drugs into an active ingredient. We prioritized these changes for further laboratory experiments. Yes, our promising proteins may be useful or complementary solutions to tracking drug-resistant parasites in the field; however, we are currently working on validating them using different lab techniques and samples collected from infected individuals.
Q: Regarding your unique niche of selecting, selecting, phenotyping, and genotyping drug-resistant Plasmodium berghei parasite, since the parasite causes malaria in some rodents and humans and animals are interconnected, is this a public health threat to humans?A: Yes, they are interconnected in studying biology and specifically drug resistance in malaria; however, Plasmodium bergheiparasites that infect rodents do not infect humans and are not a public health threat to humans. The Plasmodium berghei parasites help predict what would happen in the human parasites, especially in difficult and complex studies to perform with the Plasmodium falciparum
By Sharon Atieno